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Table 2 Linkage disequilibrium (LD) of adjacent markers for each Bos Taurus autosome (BTA)

From: The impact of genomic relatedness between populations on the genomic estimated breeding values

BTA No. of SNPs Mean r2 Persistencea
   China France USA China- France China-USA France-USA
1 3431 0.18 0.19 0.19 0.934 0.952 0.968
2 2829 0.17 0.18 0.17 0.930 0.952 0.962
3 2550 0.17 0.19 0.18 0.920 0.946 0.950
4 2570 0.16 0.17 0.17 0.909 0.933 0.948
5 2271 0.15 0.16 0.16 0.926 0.953 0.968
6 2575 0.19 0.20 0.20 0.934 0.954 0.966
7 2352 0.17 0.19 0.18 0.924 0.944 0.961
8 2430 0.17 0.18 0.18 0.912 0.944 0.949
9 2095 0.16 0.17 0.17 0.898 0.931 0.960
10 2206 0.17 0.19 0.19 0.927 0.938 0.955
11 2295 0.16 0.17 0.16 0.930 0.957 0.966
12 1773 0.15 0.16 0.16 0.920 0.947 0.958
13 1850 0.16 0.17 0.17 0.907 0.954 0.960
14 1831 0.19 0.20 0.20 0.959 0.973 0.972
15 1762 0.15 0.16 0.15 0.923 0.941 0.967
16 1726 0.17 0.18 0.19 0.926 0.954 0.948
17 1600 0.16 0.17 0.17 0.922 0.944 0.957
18 1376 0.16 0.17 0.16 0.930 0.944 0.965
19 1420 0.15 0.16 0.16 0.905 0.954 0.942
20 1568 0.17 0.19 0.18 0.919 0.949 0.966
21 1483 0.16 0.17 0.17 0.942 0.964 0.966
22 1324 0.15 0.16 0.15 0.934 0.959 0.968
23 1092 0.14 0.16 0.15 0.921 0.949 0.968
24 1312 0.16 0.17 0.16 0.932 0.959 0.969
25 1004 0.15 0.16 0.16 0.926 0.933 0.972
26 1116 0.15 0.17 0.16 0.904 0.943 0.963
27 981 0.13 0.14 0.14 0.932 0.945 0.967
28 981 0.13 0.14 0.14 0.893 0.939 0.955
29 1087 0.14 0.15 0.15 0.945 0.965 0.974
Mean 52,890b 0.16 0.17 0.17 0.924 0.949 0.962
  1. aThe correlation of r2 of adjacent SNP pairs between two populations
  2. bSum over 29 autosomes