Bacteria | Phylum | Primer sequences (5′ → 3′) | Product size, bp | References |
---|---|---|---|---|
Bacteroidetes | Bacteroidetes | F: AGCAGCCGCGGTAAT R: CTAHGCATTTCACCGCTA | 184 | [62] |
B. fibrisolvens | Firmicutes | F: CGCATGATGCAGTGTGAAAAGCTC R: CCTCCCGACACCTATTATTCATCG | 625 | [63] |
Bifidobacterium sp. | Actinobacteria | F: CTCCTGGAAACGGGTGG R: GGTGTTCTTCCCGATATCTACA | 226 | [64] |
C. coccoides | Firmicutes | F: AAATGACGGTACCTGACTAA R: CTTTGAGTTTCATTCTTGCGAA | 440 | [65] |
C. coccoides-E. rectale | Firmicutes | F: CGGTACCTGACTAAGAAGC R: AGTTTYATTCTTGCGAACG | 429 | [65] |
C. leptum subgroup | Firmicutes | F: GCACAAGCAGTGGAGT R: CTTCCTCCGTTTTGTCAA | 239 | [66] |
E. coli | Proteobacteria | F: GACCTCGGTTTAGTTCACAGA R: CACACGCTGACGCTGACCA | 96 | [67] |
F. prausnitzii a | Firmicutes | F: AATTCCGCCTACCTCTGCACT R: GGAGGAAGAAGGTCTTCGG | 248 | [68] |
Firmicutes | Firmicutes | F: GTCAGCTCGTGTCGTGA R: CCATTGTAKYACGTGTGT | 179 | [69] |
F. prausnitziib | Bacteroidetes | F: CCCTTCAGTGCCGCAGT R: GTCGCAGGATGTCAAGAC | 158 | [70] |
K. pneumoniae | Proteobacteria | F: CCTGGATCTGACCCTGCAGTA R: CCGTCGCCGTTCTGTTTC | 165 | [71] |
Lactobacillus sp. | Firmicutes | F: TACATCCCAACTCCAGAACG R: AAGCAACAGTACCACGACC | 116 | [72] |
M. elsdenii | Firmicutes | F: GACCGAAACTGCGATGCTAGA R: TCCAGAAAGCCGCTTTCGCCACT | 128 | [73] |
P. aeruginosa | Proteobacteria | F: TCCAAGTTTAAGGTGGTAGGCTG R: CTTTTCTTGGAAGCATGGCATC | 117 | [74] |
P. productus | Firmicutes | F: AACTCCGGTGGTATCAGATG R: GGGGCTTCTGAGTCAGGTA | 268 | [67] |
Pseudomonas | Proteobacteria | F: GAGTTTGATCCTGGCTCAG R: CCTTCCTCCCAACTT | 440 | [75] |
Prevotella | Bacteroidetes | F: CACRGTAAACGATGGATGCC R: GGTCGGGTTGCAGACC | 513 | [64] |
Roseburia | Firmicutes | F: TACTGCATTGGAAACTGTCG R: CGGCACCGAAGAGCAAT | 230 | [76] |
S. ruminantium | Firmicutes | F: TGCTAATACCGAATGTTG R: TCCTGCACTCAAGAAAGA | 513 | [77] |
Veillonella spp. | Firmicutes | F: A(C/T)CAACCTGCCCTTCAGA R: CGTCCCGATTAACAGAGCTT | 335 | [70] |