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Table 2 Primer pairs for 16S rRNA genes of bacteria

From: Dietary proline supplementation alters colonic luminal microbiota and bacterial metabolite composition between days 45 and 70 of pregnancy in Huanjiang mini-pigs

Bacteria

Phylum

Primer sequences (5′ → 3′)

Product size, bp

References

Bacteroidetes

Bacteroidetes

F: AGCAGCCGCGGTAAT

R: CTAHGCATTTCACCGCTA

184

[62]

B. fibrisolvens

Firmicutes

F: CGCATGATGCAGTGTGAAAAGCTC

R: CCTCCCGACACCTATTATTCATCG

625

[63]

Bifidobacterium sp.

Actinobacteria

F: CTCCTGGAAACGGGTGG

R: GGTGTTCTTCCCGATATCTACA

226

[64]

C. coccoides

Firmicutes

F: AAATGACGGTACCTGACTAA

R: CTTTGAGTTTCATTCTTGCGAA

440

[65]

C. coccoides-E. rectale

Firmicutes

F: CGGTACCTGACTAAGAAGC

R: AGTTTYATTCTTGCGAACG

429

[65]

C. leptum subgroup

Firmicutes

F: GCACAAGCAGTGGAGT

R: CTTCCTCCGTTTTGTCAA

239

[66]

E. coli

Proteobacteria

F: GACCTCGGTTTAGTTCACAGA

R: CACACGCTGACGCTGACCA

96

[67]

F. prausnitzii a

Firmicutes

F: AATTCCGCCTACCTCTGCACT

R: GGAGGAAGAAGGTCTTCGG

248

[68]

Firmicutes

Firmicutes

F: GTCAGCTCGTGTCGTGA

R: CCATTGTAKYACGTGTGT

179

[69]

F. prausnitziib

Bacteroidetes

F: CCCTTCAGTGCCGCAGT

R: GTCGCAGGATGTCAAGAC

158

[70]

K. pneumoniae

Proteobacteria

F: CCTGGATCTGACCCTGCAGTA

R: CCGTCGCCGTTCTGTTTC

165

[71]

Lactobacillus sp.

Firmicutes

F: TACATCCCAACTCCAGAACG

R: AAGCAACAGTACCACGACC

116

[72]

M. elsdenii

Firmicutes

F: GACCGAAACTGCGATGCTAGA

R: TCCAGAAAGCCGCTTTCGCCACT

128

[73]

P. aeruginosa

Proteobacteria

F: TCCAAGTTTAAGGTGGTAGGCTG

R: CTTTTCTTGGAAGCATGGCATC

117

[74]

P. productus

Firmicutes

F: AACTCCGGTGGTATCAGATG

R: GGGGCTTCTGAGTCAGGTA

268

[67]

Pseudomonas

Proteobacteria

F: GAGTTTGATCCTGGCTCAG

R: CCTTCCTCCCAACTT

440

[75]

Prevotella

Bacteroidetes

F: CACRGTAAACGATGGATGCC

R: GGTCGGGTTGCAGACC

513

[64]

Roseburia

Firmicutes

F: TACTGCATTGGAAACTGTCG

R: CGGCACCGAAGAGCAAT

230

[76]

S. ruminantium

Firmicutes

F: TGCTAATACCGAATGTTG

R: TCCTGCACTCAAGAAAGA

513

[77]

Veillonella spp.

Firmicutes

F: A(C/T)CAACCTGCCCTTCAGA

R: CGTCCCGATTAACAGAGCTT

335

[70]

  1. a Faecalibacterium prausnitzii
  2. b Fusobacterium prausnitzii