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Table 2 Highlighted genes from genome-wide (in bold) and chromosome-wise associations for scrotal circumference at 420 d of age

From: Candidate genes for male and female reproductive traits in Canchim beef cattle

Symbol

SNP Reference

Chr:Pos

Distances to gene

P-value (Min - Max)

RAP1B

rs110520377 a, rs133990240 a, rs109547215a, rs110160018 b, rs110261691 c, rs109099268 b, rs133124963 b, rs109023687 b, rs110034677 b, rs110091099 b, rs109950552 b, rs137658592 b, rs133340933b, rs134626455b, rs110001336b, rs109288126 b, rs137319832b, rs109506571 b, rs109248631 b, rs110027103 b, rs109561643 b, rs109210079 b, rs110160918 b, rs134366426b, rs109273768b, rs109024096b, rs110798702b, rs110625630 b, rs110219262 b, rs134311132 b, rs135497432 b, rs133173059 b

5:45.35..45.40

8.58..0.00

2.47E-07 - 7.64E-05

SRGAP1

rs110268648 b, rs109748105 b, rs134621421 b

5:49.98..49.98

0.00

1.88E-06 - 6.55E-06

FOXM1

rs135705262b

5:107.39

0.00

4.00E-04

TOP1

rs134822694 b, rs135287766 b

13:70.39..70.40

0.00

3.86E-06

STAU2

rs137465376b, rs134711539b, rs137821036a

14:38.89..38.97

0.00..14.40

8.66E-05 - 5.00E-04

PEX2

rs137442228d, rs110035827a, rs41730291a

14:42.33..42.37

0.00..40.77

4.10E-04 - 9.80E-04

FABP5

rs109480456a, rs136045797a, rs133930486e, rs136613853b, rs137684819c, rs133054550a, rs133483556a, rs136236059a, rs136236059a, rs137344980a, rs135804214a, rs136785030a, rs135727060a, rs133436244a, rs134708967a, rs43103204a

14:46.63..46.73

15.48..0.00..83.31

1.55E-05 - 1.16E-03

FABP12

rs43765470b, rs43765465a, rs41730924a

14:46.89..46.92

0.00..28.04

3.48E-05 - 2.88E-04

MED30

rs135065691c, rs41734435b, rs135292147a

14:48.94..48.97

4.03..0.00..9.76

8.27E-04 - 9.48E-04

TRHR

rs133457508e

14:57.52

0.00

2.27E-04

  1. aintergenic region bintron variant cdownstream variant d5′ UTR eupstream variant
  2. Gene symbols, SNP reference number, and chromosomes (Chr) and positions (Pos, in megabase) were obtained from NCBI website. Distances to gene (kilobase) are presented from 5′ to gene and 3′ to gene directions. If distance equals zero (0.00), the SNP is on intragenic region. P-values are presented as the minimum (Min) and maximum (Max) significance obtained from the generalized quasi-likelihood method