Candidate genes for male and female reproductive traits in Canchim beef cattle

Table 1 Chromosome-wise association for scrotal circumference (SC210), age at first (AFC) and second calving (ASC)

Trait	Genes	SNP Reference	Chr:Pos	Distance to gene	P-value (Min-Max)
SC210	SMIM23	rs135355728^a	20:3.48	14.22	8.96E-06
SC210	PAPD7	rs137042056^a, rs136276163^a	20:66.52..66.53	48.62..38.66	5.85E-06-p2.32E-05
SC210	ICE1	rs41582170^b	20:67.81	0.00	2.13E-05
SC210	LOC101907249	rs136535499^a	20:69.05	240.87	2.13E-05
SC210	EDARADD	rs110746860^b, rs110371081^b, rs109902875^b, rs110870694^b, rs110610232^b, rs134356559^b, rs210911576^b	28:9.14..28:9.16	0.00	6.71E-06-5.76E-05
AFC	NXPH1	rs133411648^a	4:17.46	45.77	8.26E-07
AFC	EXOC4	rs110606254^a	4:98.31	0.00	1.74E-06
AFC	ZMAT4	rs134390082^a, rs137553882^a, rs133519327^a, rs135481346^a	27:35.19..35.21	48.32..29.34	1.23E-05-3.18E-05
ASC	FMN1	rs134100268^b	10:29.88	0.00	2.43E-06
ASC	TMEM182	rs43661848^a	11:7.69	197.15	6.29E-06
ASC	LOC790871	rs136610615^a	11:22.29	69.94	2.77E-06
ASC	UBQLN3	rs43031470^c	15:48.70	0.00	3.39E-06

^aintergenic region
^bintron variant
^cexon variant
Gene symbols, SNP reference number, and chromosomes (Chr) and positions (Pos, in megabase) were obtained from NCBI website. Distances to gene (kilobase) are presented from 5′ to gene direction. If distance equals zero (0.00), the SNP is on intragenic region. P-values are presented as the minimum (Min) and maximum (Max) significance obtained from the generalized quasi-likelihood method

ISSN: 2049-1891