Table 5 Absolute values of the estimated effects of the 2.5% most relevant SNP by RQR
From: Regularized quantile regression for SNP marker estimation of pig growth curves
Phenotype | Quantile | SNP marker | Estimated effect (abs) | P-value* | Chromossome (SSC) | Position, cM |
|---|---|---|---|---|---|---|
0.20 | ALGA0096701 | 18.93 | 0.099 | 17 | 55.81 | |
0.20 | ALGA0026109 | 15.29 | 0.019 | 4 | 75.57 | |
0.20 | ALGA0024036 | 14.98 | 0.007 | 4 | 20.55 | |
0.20 | ALGA0038840 | 14.50 | 0.041 | 7 | 15.18 | |
0.20 | ALGA0029474 | 14.15 | 0.060 | 4 | 122.99 | |
0.20 | ALGA0029483 | 14.07 | 0.042 | 4 | 123.28 | |
0.50 | ALGA0047992 | 30.89 | 0.008 | 8 | 30.17 | |
Mature | 0.50 | ALGA0047995 | 29.47 | 0.006 | 8 | 30.31 |
Weight, | 0.50 | ALGA0096701 | 21.81 | 0.058 | 17 | 55.81 |
α 1 | 0.50 | ALGA0003761 | 17.22 | 0.098 | 1 | 50.37 |
0.50 | ALGA0044299 | 15.65 | 0.153 | 7 | 110.66 | |
0.50 | ALGA0096707 | 15.57 | 0.144 | 17 | 55.84 | |
0.80 | ALGA0007216 | 22.14 | 0.001 | 1 | 160.61 | |
0.80 | ALGA0003761 | 19.86 | 0.018 | 1 | 50.37 | |
0.80 | ALGA0096701 | 19.71 | 0.005 | 17 | 55.81 | |
0.80 | ALGA0042986 | 15.88 | 0.014 | 7 | 90.01 | |
0.80 | ALGA0029474 | 15.57 | 0.042 | 4 | 122.99 | |
0.80 | ALGA0042863 | 15.57 | 0.009 | 7 | 86.24 | |
0.20 | ALGA0048131 | 13.55 | 0.027 | 8 | 35.02 | |
0.20 | ALGA0044519 | 13.12 | 0.020 | 7 | 115.23 | |
0.20 | ALGA0096701 | 12.98 | 0.011 | 17 | 55.81 | |
0.20 | ALGA0029483 | 12.50 | 0.029 | 4 | 123.28 | |
0.20 | ALGA0026109 | 11.23 | 0.033 | 4 | 75.57 | |
0.20 | ALGA0003761 | 10.85 | 0.095 | 1 | 50.37 | |
0.50 | ALGA0026100 | 19.87 | 0.009 | 4 | 75.53 | |
Birth | 0.50 | ALGA0047995 | 18.71 | 0.027 | 8 | 30.31 |
Weight, | 0.50 | ALGA0048131 | 18.47 | 0.029 | 8 | 35.02 |
α 2 | 0.50 | ALGA0047992 | 16.36 | 0.062 | 8 | 30.17 |
0.50 | ALGA0039880 | 14.78 | 0.047 | 7 | 30.13 | |
0.50 | ALGA0021973 | 14.36 | 0.015 | 4 | 0.28 | |
0.80 | ALGA0048131 | 17.66 | 0.007 | 8 | 35.02 | |
0.80 | ALGA0005071 | 17.64 | 0.002 | 1 | 80.44 | |
0.80 | ALGA0042986 | 16.32 | 0.005 | 7 | 90.01 | |
0.80 | ALGA0029483 | 15.21 | 0.010 | 4 | 123.28 | |
0.80 | ALGA0003761 | 15.08 | 0.025 | 1 | 50.37 | |
0.80 | ALGA0026769 | 14.49 | 0.073 | 4 | 90.18 | |
0.20 | ALGA0049546 | 3.91 | 0.015 | 8 | 60.04 | |
0.20 | ALGA0029483 | 3.77 | 0.005 | 4 | 123.28 | |
0.20 | ALGA0096701 | 3.42 | 0.011 | 17 | 55.81 | |
0.20 | ALGA0021973 | 3.31 | 0.014 | 4 | 0.28 | |
0.20 | ALGA0048854 | 3.29 | 0.031 | 8 | 50.17 | |
0.20 | ALGA0048131 | 3.27 | 0.035 | 8 | 35.02 | |
0.50 | ALGA0048131 | 5.89 | 0.004 | 8 | 35.02 | |
Growth | 0.50 | ALGA0021973 | 4.37 | 0.023 | 4 | 0.28 |
Rate, | 0.50 | ALGA0048854 | 4.13 | 0.058 | 8 | 50.17 |
α 3 | 0.50 | ALGA0096701 | 3.66 | 0.075 | 17 | 55.81 |
0.50 | ALGA0027642 | 3.62 | 0.054 | 4 | 102.39 | |
0.50 | ALGA0027644 | 3.36 | 0.087 | 4 | 102.41 | |
0.80 | ALGA0003761 | 4.43 | 0.008 | 1 | 50.37 | |
0.80 | ALGA0048131 | 3.74 | 0.018 | 8 | 35.02 | |
0.80 | ALGA0024881 | 3.61 | 0.005 | 4 | 40.50 | |
0.80 | ALGA0044299 | 3.34 | 0.052 | 7 | 110.66 | |
0.80 | ALGA0026769 | 3.07 | 0.105 | 4 | 90.18 | |
0.80 | ALGA0048133 | 3.01 | 0.034 | 8 | 35.04 |