Target | Primer sequences (5′→3′) | Product size, bp | Reference | |
---|---|---|---|---|
Total bacteria | F | CGGCAACGAGCGCAACCC | 130 | [27] |
R | CCATTGTAGCACGTGTGTAGCC | Â | [27] | |
Protozoa | F | GCTTTCGWTGGTAGTGTATT | 223 | [28] |
R | CTTGCCCTCYAATCGTWCT | Â | [28] | |
Fungi | F | GAGGAAGTAAAAGTCGTAACAAGGTTTC | 120 | [27] |
R | CAAATTCACAAAGGGTAGGATGATT | Â | [27] | |
Ruminococcus albus | F | CCCTAAAAGCAGTCTTAGTTCG | 175 | [29] |
R | CCTCCTTGCGGTTAGAACA | Â | [29] | |
R. flavefaciens | F | CGAACGGAGATAATTTGAGTTTACTTAGG | 132 | [27] |
R | CGGTCTCTGTATGTTATGAGGTATTACC | Â | [27] | |
Fibrobacter succinogenes | F | GTTCGGAATTACTGGGCGTAAA | 121 | [27] |
R | CGCCTGCCCCTGAACTATC | Â | [27] | |
Selenomonas ruminantium | F | TGCTAATACCGAATGTTG | 515 | [30] |
R | TCCTGCACTCAAGAAAGA | Â | [30] | |
Megasphaera elsdenii | F | GACCGAAACTGCGATGCTAGA | 128 | [31] |
R | CGCCTCAGCGTCAGTTGTC | Â | [31] | |
Streptococcus bovis | F | ATGTTAGATGCTTGAAAGGAGCAA | 90 | [32] |
 | R | CGCCTTGGTGAGCCGTTA |  | [32] |