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Table 2 Statistically significant SNPs (P < 0.00001) in selection signature regions

From: Selection signatures in Canchim beef cattle

dbSNP a BTA b Pos, bpc SNP d iHS e piHS f Window Gene Distance gene-SNP g Region
rs109140890 5 54,155,228 [A/G] 4.71 5.61 54 SLC16A7 0 Intron
rs109099698 5 54,195,124 [A/G] 4.54 5.26 54 SLC16A7 0 Intron
rs134749225 5 54,198,119 [A/G] −4.58 5.34 54 SLC16A7 0 Intron
rs137138760 5 54,272,467 [G/T] −4.47 5.11 55 LOC101907520 33,220 Intergenic
rs109120533 5 54,288,524 [C/T] 4.57 5.32 55 LOC101907520 49,277 Intergenic
rs135504287 5 54,295,924 [A/C] −4.78 5.76 55 LOC101907520 56,677 Intergenic
rs133591560 5 54,350,533 [C/T] −4.46 5.08 55 LOC101907520 111,286 Intergenic
rs111002641 5 54,379,176 [A/C] 4.84 5.89 55 LOC101907520 139,929 Intergenic
rs133087713 5 54,399,438 [A/G] −4.57 5.32 55 LOC101907520 160,191 Intergenic
rs135847398 5 54,511,415 [C/T] −4.46 5.09 55 LOC101907520 272,168 Intergenic
rs110300059 5 54,745,039 [C/T] −4.56 5.29 55 LRIG3 139,355 Intergenic
rs133256279 5 54,747,486 [A/C] −4.86 5.93 55 LRIG3 136,908 Intergenic
rs132685585 5 55,175,674 [G/T] −4.43 5.03 55 LRIG3 239,313 Intergenic
rs136462146 5 55,199,380 [C/T] −4.51 5.19 55 LRIG3 263,019 Intergenic
rs108956573 5 57,606,624 [C/T] −4.58 5.33 58 RPS26 0 5′ UTR
rs41657485 5 57,625,533 [A/G] −4.55 5.28 58 IKZF4 0 Intron
rs134894252 5 57,634,601 [A/C] −4.59 5.35 58 IKZF4 0 Intron
rs135485666 5 57,643,602 [C/T] 4.43 5.02 58 SUOX 0 Intron
rs134235538 5 57,647,574 [C/T] −4.55 5.27 58 RAB5B 0 3′ UTR
rs137809406 5 57,679,838 [C/T] 4.52 5.22 58 DGKA 0 Intron
rs29018280 5 57,681,031 [G/T] 4.61 5.40 58 DGKA 0 Intron
rs135598509 5 57,690,096 [C/T] −4.60 5.37 58 DGKA 0 Intron
rs134140651 5 57,697,408 [C/T] −4.52 5.21 58 DGKA 0 Intron
rs137073278 5 57,710,890 [C/T] −4.59 5.36 58 PYM1 0 Intron
rs135368690 5 57,729,851 [A/C] −4.59 5.36 58 PYM1 5,697 Intergenic
rs133170163 5 57,736,703 [C/T] −4.59 5.36 58 PYM1 12,552 Intergenic
rs134681832 5 57,741,701 [C/T] −4.68 5.55 58 PYM1 17,550 Intergenic
rs135835510 5 58,467,329 [A/G] −4.43 5.02 59 LOC782296 2,533 Intergenic
rs109346532 5 60,260,395 [C/T] −4.47 5.11 60 TESPA1 5,391 Intergenic
rs134633547 5 60,261,561 [C/T] −4.47 5.11 60 TESPA1 4,225 Intergenic
rs109158476 5 60,263,049 [C/T] 4.56 5.28 60 TESPA1 2,737 Intergenic
rs134963725 5 60,267,575 [A/G] 4.54 5.25 60 TESPA1 0 Intron
rs29002144 5 62,646,555 [C/T] −4.55 5.28 63 LOC101905642 253,100 Intergenic
rs108993286 5 65,656,474 [A/G] 4.62 5.42 66 SPIC 5,989 Intergenic
rs109866300 5 68,257,487 [A/G] 4.52 5.22 68 TXNRD1 0 Intron
rs110636438 5 72,348,422 [C/T] 4.61 5.39 73 LARGE 0 Intron
rs110912484 5 72,353,301 [A/G] 4.79 5.79 73 LARGE 0 Intron
rs41669840 5 72,405,286 [G/T] −5.26 6.85 73 LARGE 0 Intron
rs136536638 5 72,410,862 [A/C] −4.47 5.11 73 LARGE 0 Intron
rs137267491 14 25,505,663 [G/T] 4.44 5.05 25 IMPAD1 39,242 Intergenic
rs41627946 14 25,506,575 [G/T] −4.62 5.41 25 IMPAD1 38,330 Intergenic
rs134846474 14 25,537,252 [A/G] −4.53 5.22 25 IMPAD1 7,653 Intergenic
rs137748068 14 25,819,872 [A/G] −4.47 5.10 25 FAM110B 230,370 Intergenic
rs42299083 14 25,846,511 [C/T] −4.52 5.22 25 FAM110B 203,731 Intergenic
rs42299080 14 25,851,646 [C/T] −4.75 5.70 25 FAM110B 198,596 Intergenic
rs136141080 14 25,863,924 [C/T] −4.66 5.50 25 FAM110B 186,318 Intergenic
rs133252286 14 25,866,853 [C/T] −4.54 5.24 25 FAM110B 183,389 Intergenic
rs134567839 14 25,877,586 [C/T] −4.57 5.31 25 FAM110B 172,656 Intergenic
  1. a dbSNP, SNP reference name
  2. b BTA, Bos taurus autosome
  3. c Pos, position in base pairs (bp) according to the Bovine UMD3.1 assembly
  4. d SNP, Single Nucleotide Polymorphism
  5. e iHS, integrated haplotype score
  6. f piHS, transformed integrated haplotype score
  7. g The value 0 means that the SNP is located within the gene