Table 2 Statistically significant SNPs (P < 0.00001) in selection signature regions
dbSNP a | BTA b | Pos, bpc | SNP d | iHS e | piHS f | Window | Gene | Distance gene-SNP g | Region |
|---|---|---|---|---|---|---|---|---|---|
rs109140890 | 5 | 54,155,228 | [A/G] | 4.71 | 5.61 | 54 | SLC16A7 | 0 | Intron |
rs109099698 | 5 | 54,195,124 | [A/G] | 4.54 | 5.26 | 54 | SLC16A7 | 0 | Intron |
rs134749225 | 5 | 54,198,119 | [A/G] | −4.58 | 5.34 | 54 | SLC16A7 | 0 | Intron |
rs137138760 | 5 | 54,272,467 | [G/T] | −4.47 | 5.11 | 55 | LOC101907520 | 33,220 | Intergenic |
rs109120533 | 5 | 54,288,524 | [C/T] | 4.57 | 5.32 | 55 | LOC101907520 | 49,277 | Intergenic |
rs135504287 | 5 | 54,295,924 | [A/C] | −4.78 | 5.76 | 55 | LOC101907520 | 56,677 | Intergenic |
rs133591560 | 5 | 54,350,533 | [C/T] | −4.46 | 5.08 | 55 | LOC101907520 | 111,286 | Intergenic |
rs111002641 | 5 | 54,379,176 | [A/C] | 4.84 | 5.89 | 55 | LOC101907520 | 139,929 | Intergenic |
rs133087713 | 5 | 54,399,438 | [A/G] | −4.57 | 5.32 | 55 | LOC101907520 | 160,191 | Intergenic |
rs135847398 | 5 | 54,511,415 | [C/T] | −4.46 | 5.09 | 55 | LOC101907520 | 272,168 | Intergenic |
rs110300059 | 5 | 54,745,039 | [C/T] | −4.56 | 5.29 | 55 | LRIG3 | 139,355 | Intergenic |
rs133256279 | 5 | 54,747,486 | [A/C] | −4.86 | 5.93 | 55 | LRIG3 | 136,908 | Intergenic |
rs132685585 | 5 | 55,175,674 | [G/T] | −4.43 | 5.03 | 55 | LRIG3 | 239,313 | Intergenic |
rs136462146 | 5 | 55,199,380 | [C/T] | −4.51 | 5.19 | 55 | LRIG3 | 263,019 | Intergenic |
rs108956573 | 5 | 57,606,624 | [C/T] | −4.58 | 5.33 | 58 | RPS26 | 0 | 5′ UTR |
rs41657485 | 5 | 57,625,533 | [A/G] | −4.55 | 5.28 | 58 | IKZF4 | 0 | Intron |
rs134894252 | 5 | 57,634,601 | [A/C] | −4.59 | 5.35 | 58 | IKZF4 | 0 | Intron |
rs135485666 | 5 | 57,643,602 | [C/T] | 4.43 | 5.02 | 58 | SUOX | 0 | Intron |
rs134235538 | 5 | 57,647,574 | [C/T] | −4.55 | 5.27 | 58 | RAB5B | 0 | 3′ UTR |
rs137809406 | 5 | 57,679,838 | [C/T] | 4.52 | 5.22 | 58 | DGKA | 0 | Intron |
rs29018280 | 5 | 57,681,031 | [G/T] | 4.61 | 5.40 | 58 | DGKA | 0 | Intron |
rs135598509 | 5 | 57,690,096 | [C/T] | −4.60 | 5.37 | 58 | DGKA | 0 | Intron |
rs134140651 | 5 | 57,697,408 | [C/T] | −4.52 | 5.21 | 58 | DGKA | 0 | Intron |
rs137073278 | 5 | 57,710,890 | [C/T] | −4.59 | 5.36 | 58 | PYM1 | 0 | Intron |
rs135368690 | 5 | 57,729,851 | [A/C] | −4.59 | 5.36 | 58 | PYM1 | 5,697 | Intergenic |
rs133170163 | 5 | 57,736,703 | [C/T] | −4.59 | 5.36 | 58 | PYM1 | 12,552 | Intergenic |
rs134681832 | 5 | 57,741,701 | [C/T] | −4.68 | 5.55 | 58 | PYM1 | 17,550 | Intergenic |
rs135835510 | 5 | 58,467,329 | [A/G] | −4.43 | 5.02 | 59 | LOC782296 | 2,533 | Intergenic |
rs109346532 | 5 | 60,260,395 | [C/T] | −4.47 | 5.11 | 60 | TESPA1 | 5,391 | Intergenic |
rs134633547 | 5 | 60,261,561 | [C/T] | −4.47 | 5.11 | 60 | TESPA1 | 4,225 | Intergenic |
rs109158476 | 5 | 60,263,049 | [C/T] | 4.56 | 5.28 | 60 | TESPA1 | 2,737 | Intergenic |
rs134963725 | 5 | 60,267,575 | [A/G] | 4.54 | 5.25 | 60 | TESPA1 | 0 | Intron |
rs29002144 | 5 | 62,646,555 | [C/T] | −4.55 | 5.28 | 63 | LOC101905642 | 253,100 | Intergenic |
rs108993286 | 5 | 65,656,474 | [A/G] | 4.62 | 5.42 | 66 | SPIC | 5,989 | Intergenic |
rs109866300 | 5 | 68,257,487 | [A/G] | 4.52 | 5.22 | 68 | TXNRD1 | 0 | Intron |
rs110636438 | 5 | 72,348,422 | [C/T] | 4.61 | 5.39 | 73 | LARGE | 0 | Intron |
rs110912484 | 5 | 72,353,301 | [A/G] | 4.79 | 5.79 | 73 | LARGE | 0 | Intron |
rs41669840 | 5 | 72,405,286 | [G/T] | −5.26 | 6.85 | 73 | LARGE | 0 | Intron |
rs136536638 | 5 | 72,410,862 | [A/C] | −4.47 | 5.11 | 73 | LARGE | 0 | Intron |
rs137267491 | 14 | 25,505,663 | [G/T] | 4.44 | 5.05 | 25 | IMPAD1 | 39,242 | Intergenic |
rs41627946 | 14 | 25,506,575 | [G/T] | −4.62 | 5.41 | 25 | IMPAD1 | 38,330 | Intergenic |
rs134846474 | 14 | 25,537,252 | [A/G] | −4.53 | 5.22 | 25 | IMPAD1 | 7,653 | Intergenic |
rs137748068 | 14 | 25,819,872 | [A/G] | −4.47 | 5.10 | 25 | FAM110B | 230,370 | Intergenic |
rs42299083 | 14 | 25,846,511 | [C/T] | −4.52 | 5.22 | 25 | FAM110B | 203,731 | Intergenic |
rs42299080 | 14 | 25,851,646 | [C/T] | −4.75 | 5.70 | 25 | FAM110B | 198,596 | Intergenic |
rs136141080 | 14 | 25,863,924 | [C/T] | −4.66 | 5.50 | 25 | FAM110B | 186,318 | Intergenic |
rs133252286 | 14 | 25,866,853 | [C/T] | −4.54 | 5.24 | 25 | FAM110B | 183,389 | Intergenic |
rs134567839 | 14 | 25,877,586 | [C/T] | −4.57 | 5.31 | 25 | FAM110B | 172,656 | Intergenic |