Table 2 Gene and genotype frequency of the 5 SNPs in different pig breeds
From: Gene expression of vascular endothelial growth factor A and hypoxic adaptation in Tibetan pig
Loci | Breed | Genotype (number/percentage) | Allele | ||||
|---|---|---|---|---|---|---|---|
GG | GC | CC | P value* (Fisher’s exact test) | G | C | ||
G-2745C | YL | 10/1 | 0/0 | 0/0 | 0.237 | 1 | 0 |
DN | 10/1 | 0/0 | 0/0 | 0.237 | 1 | 0 | |
TP | 8/0.800 | 2/0.200 | 0/0 | 0.900 | 0.100 | ||
GG | GA | AA | G | A | |||
G-2442A | YL | 10/1 | 0/0 | 0/0 | 0.500 | 1 | 0 |
DN | 9/0.900 | 1/0.1 | 0/0 | 0.763 | 0.950 | 0.050 | |
TP | 9/0.900 | 1/0.1 | 0/0 | 0.950 | 0.050 | ||
GG | G-deletion | Deletion | G | Deletion | |||
G-2435 deletion | YL | 8/0.889 | 1/0.111 | 0/0 | 0.474 | 0.940 | 0.060 |
DN | 7/0.700 | 0/0 | 3/0.300 | 0.105 | 0.700 | 0.300 | |
TP | 10/1 | 0/0 | 0/0 | 1 | 0 | ||
TT | TC | CC | T | C | |||
T-1010C | YL | 35/0.875 | 5/0.125 | 0/0 | 0.342 | 0.938 | 0.062 |
DN | 40/1 | 0/0 | 0/0 | 0.010 | 1 | 0 | |
TP | 16/0.8 | 4/0.2 | 0/0 | 0.900 | 0.100 | ||
CC | CT | TT | C | T | |||
C-1773 T | YL | 1/0.034 | 7/0.233 | 22/0.733 | 0.000 | 0.150 | 0.850 |
DN | 36/1 | 0/0 | 0/0 | 0.001 | 1 | 0 | |
TP | 14//0.700 | 4/0.200 | 2/0.100 | 0.800 | 0.200 | ||