Skip to main content

Table 1 Rankings of genes in various datasets and average ranking

From: A gene expression estimator of intramuscular fat percentage for use in both cattle and sheep

Genes1

Description

Rank

Average rank6

Source

Sheep correlation3

Cattle correlation4

Cattle DE5

 

CIDEA 2

cell death-inducing dffa-like effector a

11

4

12

1

TAG 7

ACSM1

acyl-CoA synthetase medium-chain family member 1

16

35

23

3

TAG

ADIPOQ

adiponectin

17

46

25

8

TAG

FABP4

fatty acid binding protein 4,adipocyte

24

54

19

5

TAG

PLIN1

perilipin1

25

15

49

6

TAG

TUSC5

tumor suppressor candidate 5

54

73

63

13

TAG

LPL

lipoprotein lipase

62

123

473

23

EMMIX A8

MAL2

mal, T-cell differentiation protein 2

67

33

177

16

FA

PPARG

peroxisome proliferator-activated receptor gamma

73

117

152

19

PPARG

DGAT2

diacylglycerol o-acyltransferase 2

74

6

30

4

TAG

AGPAT2

phosphate O-acyltransferase 2

100

21

118

14

TAG

G0S2

g0/g1switch 2

123

223

72

20

EMMIX A

FASN

fatty acid synthase

167

39

17

9

FA

THRSP

thyroid hormone responsive

187

13

1

2

TAG

ELOVL6

ELOVL fatty acid elongase 6

231

34

6

7

FA

TKT

transketolase

244

229

106

26

PPARG

CIDEC

cell death-inducing DFFA-like effector c

272

41

61

15

TAG

CYB5A

cytochrome b5 type A (microsomal)

307

64

483

27

PPARG

BHMT2

betaine-homocysteine S-methyltransferase 2

317

207

304

28

FA

RBP4

retinol binding protein 4, plasma

346

139

78

21

FA

ACSS2

acyl-CoA synthetase short-chain family member 2

440

19

43

12

FA

ARSK

arylsulfatase family, member K

447

948

502

42

EMMIX A

SCD

stearoyl-CoA desaturase

472

9

22

10

FA

ACACA

acetyl-CoA carboxylase alpha

484

56

63

17

FA

ACLY

atp citrate lyase

535

148

16

18

PPARG

PLS1

plastin1

659

502

6,513

49

TAG9

TF

transferrin

742

310

20

22

PPARG

CPT2

carnitine palmitoyltransferase 2

782

664

528

44

EMMIX A

PCK1

phosphoenolpyruvate carboxykinase 1

859

20

13

11

TAG

PTPLB

protein tyrosine phosphatase-like, member b

884

275

479

37

PPARG 9

ADIG

adipogenin

937

183

36

24

TAG

PCK2

phosphoenolpyruvate carboxykinase 2 (mitochondrial)

972

92

1,629

34

FA

INTS9

integrator complex subunit 9

984

1,183

80

36

PPARG

PDE3B

phosphodiesterase 3B, cGMP-inhibited

1,426

206

1,135

40

FA

ACER3

alkaline ceramidase 3

1,519

683

969

52

PPARG

APOA1

apolipoprotein A-I

1,521

3,264

119

45

EMMIX A

ARSI

periplasmic arylsulfatase

1,865

114

7,806

43

EMMIX A

IDH1

isocitrate dehydrogenase 1 (NADP+), soluble

2,070

320

210

39

PPARG

APOE

apolipoprotein E

2,224

227

424

41

EMMIX A

GSTA1

glutathione S-transferase alpha 1

2,302

998

3

29

PPARG

SULT1A1

sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1

2,341

3,667

172

53

EMMIX A

ANPEP

alanyl (membrane) aminopeptidase

2,703

2,091

87

47

FA

HSD17B12

hydroxysteroid (17-beta) dehydrogenase 12

2,726

74

457

35

PPARG9

CLU

clusterin

2,968

65

136

30

FA

BDH1

3-hydroxybutyrate dehydrogenase, type 1

3,240

8

1,797

31

EMMIX A

ACSS3

acyl-CoA synthetase short-chain family member 3

3,689

137

347

38

PPARG

ME1

malic enzyme 1, NADP(+)-dependent, cytosolic

3,741

69

2,457

46

EMMIX A

S100G

S100 calcium binding protein G

4,009

61

26

25

TAG

INSIG1

insulin induced gene 1

4,562

412

31

33

FA

G6PD

glucose-6-phosphate dehydrogenase

4,918

982

95

51

PPARG

GPAM

glycerol-3-phosphate acyltransferase, (mitochondrial)

5,886

1,364

185

55

TAG9

FBP1

fructose-1, 6-bisphosphatase 1

6,604

706

2

32

FA

QPRT

quinolinate phosphoribosyltransferase

7,565

329

137

50

PPARG

ALAD

aminolevulinate dehydratase

9,051

422

347

54

PPARG

CEBPA

CCAAT/enhancer binding protein (C/EBP), alpha

10,545

593

65

48

PPARG

  1. 1Full list of genes and probes is included as Additional file 1: Table S1.
  2. 2Genes in bold were included in the 30 gene set correlated with IMF% in cattle and sheep generated by the current study.
  3. 3Gene rank of the correlation coefficients in Sheep correlation dataset.
  4. 4Gene rank of the correlation coefficients in Cattle correlation dataset.
  5. 5Gene rank of DE value in Cattle DE dataset.
  6. 6Genes in this table were ranked from 1–55 based on their ranking in each of the cattle and the sheep correlation datasets. The average ranking across the two datasets was calculated and the genes were again ranked from 1 to 55.
  7. 7These genes were both included in TAG, FA and PPARG gene sets and annotated with the GO term “lipid metabolic process” and in EMMIX cluster A.
  8. 8Genes were annotated with the GO term “lipid metabolic process” and in EMMIX cluster A.
  9. 9Genes were included in each corresponding gene set in the current analysis based on the biological functions. But these genes were not the part of TAG, FA and PPARG gene sets in our previous work [4].
Back to article page

Journal of Animal Science and Biotechnology

ISSN: 2049-1891