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Table 2 The number of reads obtained and percentages of mapped reads per sample

From: The liver transcriptome of two full-sibling Songliao black pigs with extreme differences in backfat thickness

Sample ID1

Total reads number, M2

Mapping rate, %3

CDS exons, %

5′UTR, %

3′UTR, %

Intron, %

H906

53.08

84.80

72.85

1.78

10.43

6.45

H909

52.16

92.90

76.21

2.64

7.98

5.11

H710

54.88

87.86

75.85

1.81

9.77

5.01

H712

51.56

88.17

75.28

1.79

8.89

6.35

  1. 1. H710, H712 and H906, H909 are two pair full-sibs pigs. H710, H906 and H712, H909 are the BH and BL groups respectively.
  2. 2. Indicate millions of reads.
  3. 3. Use the Ensembl V68 as the reference genome annotation to classify the mapping tags into the different regions. Ratio of the tags mapping on the subregion of the gene was calculated as the tags on each region divided by the total tags on the whole genome.