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Table 7 The localization of differentially expressed fat–related genes

From: Identification and characterization of genes that control fat deposition in chickens

Alignments Gene Symbol Transcript ID Gene ontology
chrZ:53399697-53408327 LPL, ENSGALG00000015425 NM_205282 GO:0004465 lipoprotein lipase activity;
GO:0004806 triacylglycerol lipase activity;
GO:0006629 lipid metabolism;
chr4:53309684-53311980 SULT1B1, SULT1B1 NM_204545 GO:0006629 lipid metabolism;
GO:0008202 steroid metabolism;
chr28:1247898-1259038 ACSBG2(RCJMB04_9i11) NM_001012846 006629 lipid metabolism;
GO:0006631 fatty acid metabolism;
chr15:4477440-4512637 AACS, ENSGALG00000002899 NM_001006184 GO:0006629 lipid metabolism;
GO:0006631 fatty acid metabolism;
GO:0005829 cytosol
chr1:71256654-71270462 PNPLA3 XM_416457 GO:0006629 lipid metabolism;
GO:0006629 lipid metabolism;
GO:0016042 lipid catabolism
chr7:2296059-2312305 FRZB, ENSGALG00000002763 NM_204772 GO:0017147 Wnt-protein binding;
GO:0007275 development;
GO:0016055 Wnt receptor signaling pathway
chr15:8372896-8375331 DDT(RCJMB04_2c16) NM_001030667 GO:0006583 melanin biosynthesis from tyrosine;
chr1:132739051132944192 DHRSX XM_001232713 GO:0055114 oxidation reduction
chr7:6879282-6888069 LSS NM_001006514 GO:0006695 cholesterol biosynthesis
chr7:22713218-22757360 DPP4 NM_001031255 GO:0005515 protein binding;
GO:0008239 dipeptidyl-peptidase activity;
GO:0042803 protein homodimerization activity;
chr13:13578206-13590970 MGAT4B XM_414605 GO:0005975 carbohydrate metabolism;
chrZ:23472632-23474241 HMGCR, ENSGALG00000014948 NM_204485 GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity;
GO:0016491 oxidoreductase activity;
GO:0050661 NADP binding;
chr5:24711230-24725772 ENSGALG00000008078, FUT8 NM_001004766 GO:0008424 glycoprotein 6-alpha-L-fucosyltransferase activity;
GO:0046921 alpha(1,6)-fucosyltransferase activity;
GO:0007179 transforming growth factor beta receptor signaling pathway
chr6:28077530-28103087 GPAM XM_421757 GO:0006631 fatty acid metabolism;
GO:0019432 triacylglycerol biosynthesis;
GO:0040018 positive regulation of body size;
chr20:3629311-3638107 SGK2 XM_417346;CR387909 GO:0004713 protein-tyrosine kinase activity;
GO:0005524 ATP binding;
chr3:34793675-34819927 PRKD3 XM_419526 GO:0004713 protein-tyrosine kinase activity;
GO:0005524 ATP binding;
chr20:2633184-2647420 ACSS2 XM_417342 GO:0006085 acetyl-CoA biosynthesis;
Chr1: 64269656-64276867 LOC418170 XM_416401 GO:0055114 oxidation reduction
chr6:17648418-17654233 CYP2C45 SNM_001001752 GO:0055114 oxidation reduction
chr4:11367346-11377074 NSDHL XM_420279 GO:0005975 carbohydrate metabolism;
GO:0008203 cholesterol metabolism;
chrUn_random:7545445-7546725 FDPS XM_422855 GO:0006695 cholesterol biosynthesis
chr2:144322566-144334593 SQLE NM_001030953 GO:0055114 oxidation reduction;
chr8:26011324-26019531 DHCR24 NM_001031288 GO:0016125 sterol metabolism;
chr1:64293981-64312331 AKR1B1 XR_026805 GO:0055114 oxidation reduction
chr1:118069255-119072613 DMD NM_205299 GO:0007519 striated muscle development; cytoplasm;
GO:0016010 dystrophin-associated glycoprotein complex;
GO:0045121 lipid raft;
chr18:4906222-4942593 FASN, ENSGALG00000002747 NM_205155;J02839 GO:0000036 acyl carrier activity;
GO:0004312 fatty-acid synthase activity;
GO:0006633 fatty acid biosynthesis;
chr4:59493262-59560594 ELOVL6   GO:0006633 fatty acid biosynthesis
chr6:11960338-11966483 HKDC1 XM_421579 GO:0005524 ATP binding;
GO:0005975 carbohydrate metabolism;
GO:0006096 glycolysis;
chr2:64406040-64411831 GCNT2 XM_426036;XM_418950 GO:0008375 acetylglucosaminyltransferase activity;
chr1:98522850-98669948 GBE1 XM_425536 GO:0005975 carbohydrate metabolism