Skip to main content

Table 7 The localization of differentially expressed fat–related genes

From: Identification and characterization of genes that control fat deposition in chickens

Alignments

Gene Symbol

Transcript ID

Gene ontology

chrZ:53399697-53408327

LPL, ENSGALG00000015425

NM_205282

GO:0004465 lipoprotein lipase activity;

GO:0004806 triacylglycerol lipase activity;

GO:0006629 lipid metabolism;

chr4:53309684-53311980

SULT1B1, SULT1B1

NM_204545

GO:0006629 lipid metabolism;

GO:0008202 steroid metabolism;

chr28:1247898-1259038

ACSBG2(RCJMB04_9i11)

NM_001012846

006629 lipid metabolism;

GO:0006631 fatty acid metabolism;

chr15:4477440-4512637

AACS, ENSGALG00000002899

NM_001006184

GO:0006629 lipid metabolism;

GO:0006631 fatty acid metabolism;

GO:0005829 cytosol

chr1:71256654-71270462

PNPLA3

XM_416457

GO:0006629 lipid metabolism;

GO:0006629 lipid metabolism;

GO:0016042 lipid catabolism

chr7:2296059-2312305

FRZB, ENSGALG00000002763

NM_204772

GO:0017147 Wnt-protein binding;

GO:0007275 development;

GO:0016055 Wnt receptor signaling pathway

chr15:8372896-8375331

DDT(RCJMB04_2c16)

NM_001030667

GO:0006583 melanin biosynthesis from tyrosine;

chr1:132739051132944192

DHRSX

XM_001232713

GO:0055114 oxidation reduction

chr7:6879282-6888069

LSS

NM_001006514

GO:0006695 cholesterol biosynthesis

chr7:22713218-22757360

DPP4

NM_001031255

GO:0005515 protein binding;

GO:0008239 dipeptidyl-peptidase activity;

GO:0042803 protein homodimerization activity;

chr13:13578206-13590970

MGAT4B

XM_414605

GO:0005975 carbohydrate metabolism;

chrZ:23472632-23474241

HMGCR, ENSGALG00000014948

NM_204485

GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity;

GO:0016491 oxidoreductase activity;

GO:0050661 NADP binding;

chr5:24711230-24725772

ENSGALG00000008078, FUT8

NM_001004766

GO:0008424 glycoprotein 6-alpha-L-fucosyltransferase activity;

GO:0046921 alpha(1,6)-fucosyltransferase activity;

GO:0007179 transforming growth factor beta receptor signaling pathway

chr6:28077530-28103087

GPAM

XM_421757

GO:0006631 fatty acid metabolism;

GO:0019432 triacylglycerol biosynthesis;

GO:0040018 positive regulation of body size;

chr20:3629311-3638107

SGK2

XM_417346;CR387909

GO:0004713 protein-tyrosine kinase activity;

GO:0005524 ATP binding;

chr3:34793675-34819927

PRKD3

XM_419526

GO:0004713 protein-tyrosine kinase activity;

GO:0005524 ATP binding;

chr20:2633184-2647420

ACSS2

XM_417342

GO:0006085 acetyl-CoA biosynthesis;

Chr1: 64269656-64276867

LOC418170

XM_416401

GO:0055114 oxidation reduction

chr6:17648418-17654233

CYP2C45

SNM_001001752

GO:0055114 oxidation reduction

chr4:11367346-11377074

NSDHL

XM_420279

GO:0005975 carbohydrate metabolism;

GO:0008203 cholesterol metabolism;

chrUn_random:7545445-7546725

FDPS

XM_422855

GO:0006695 cholesterol biosynthesis

chr2:144322566-144334593

SQLE

NM_001030953

GO:0055114 oxidation reduction;

chr8:26011324-26019531

DHCR24

NM_001031288

GO:0016125 sterol metabolism;

chr1:64293981-64312331

AKR1B1

XR_026805

GO:0055114 oxidation reduction

chr1:118069255-119072613

DMD

NM_205299

GO:0007519 striated muscle development; cytoplasm;

GO:0016010 dystrophin-associated glycoprotein complex;

GO:0045121 lipid raft;

chr18:4906222-4942593

FASN, ENSGALG00000002747

NM_205155;J02839

GO:0000036 acyl carrier activity;

GO:0004312 fatty-acid synthase activity;

GO:0006633 fatty acid biosynthesis;

chr4:59493262-59560594

ELOVL6

 

GO:0006633 fatty acid biosynthesis

chr6:11960338-11966483

HKDC1

XM_421579

GO:0005524 ATP binding;

GO:0005975 carbohydrate metabolism;

GO:0006096 glycolysis;

chr2:64406040-64411831

GCNT2

XM_426036;XM_418950

GO:0008375 acetylglucosaminyltransferase activity;

chr1:98522850-98669948

GBE1

XM_425536

GO:0005975 carbohydrate metabolism