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Table 2 Fold-changes of significantly differential expressed genes in WRR and XH chickens

From: Identification and characterization of genes that control fat deposition in chickens

Gene symbol Gene title P value Fold change Chromosome alignment s
Lipid metabolic process
SULT1B1 sulfotransferase family, cytosolic, 1B, member 1 0.0001 7.689 chr4:53309684-53311980
ACSBG2 acyl-CoA synthetase bubblegum family member 2 0.004 5.382 chr28:1247898-1259038
LPL lipoprotein lipase 0.018 2.528 chrZ:53399697-53408327
AACS acetoacetyl-CoA synthetase 0.021 2.507 chr15:4477440-4512637
PNPLA3 Patatin-like phospholipase domain containing 3 0.024 3.028 chr1:71256654-71270462
AOAH acyloxyacyl hydrolase (neutrophil) 0.043 -2.516 chr2:46723433-46778195
Carbohydrate metabolic process
MGAT4B mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, iso 8.33E-05 2.178 chr13:13578206-13590970
XYLB xylulokinase homolog (H. influenzae) 0.0001 2.603 chr2:6032066-6115406
GBE1 glucan (1,4-alpha-), branching enzyme 1 (glycogen branching enzyme, Andersen dis 0.0008 2.119 chr1:98522850-98669948
PGM1 phosphoglucomutase 1 0.002 2.179 chr8:28644700-28665874
HKDC1 hexokinase domain containing 1 0.038 7.368 chr6:11960338-11966483
Fatty acid biosynthetic process
ELOVL6 ELOVL family member 6, elongation of long chain fatty acids 0.002 2.181 chr4:59493262-59560594
FASN fatty acid synthase 0.029 2.840 chr18:4906222-4942593
Cholesterol biosynthetic process
LSS lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) 0,001 2,186 chr7:6878402-6888484
HMGCR 3-hydroxy-3-methylglutaryl-Coenzyme A reductase 0,005 3,236 chrZ:23472632-23474241
FDPS farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallylt 0,021 2,167 chrUn_random:7545445-7546725
DHCR24 24-dehydrocholesterol reductase 0,026 2,587 chr8:26011324-26019531
HMGCR 3-hydroxy-3-methylglutaryl-Coenzyme A reductase 0,027 2,805 chrZ:23472597-23491333
Oxidation reduction
CYP1A4 cytochrome P450 1A4 0,001 9,342 chr10:1822784-1826314
CYP1A1 cytochrome P450, family 1, subfamily A, polypeptide 1 0,003 6,485 chr10:1806680-1809495
DHRSX dehydrogenase/reductase (SDR family) X-linked 0,004 -2,1001 chr1:132739051-132944192
LOC418170 similar to aldose reductase 0,014 2,042 chr1:64269892-64273020
CYP2C45 cytochrome P-450 2C45 0,019 -5,673 chr6:17648418-17654233
AKR1B1 aldo-keto reductase family 1, member B1 (aldose reductase) 0,028 2,788 chr1:64293981-64312331
MICAL1 microtubule associated monoxygenase, calponin and LIM domain containing 1 0,029 -2,186 chr26:25422-27136
CYP2C18 cytochrome P450, family 2, subfamily C, polypeptide 18 0,040 -3,214 chr6:18655324-18664396
CYP4V2 cytochrome P450, family 4, subfamily V, polypeptide 2 0,048 2,426 chr4:63195381-63202122
DDO D-aspartate oxidase 0,049 2,219 chr3:69194822-69198140
Cicardian clock genes
ARNTL aryl hydrocarbon receptor nuclear translocator-like 0,002 -2,043 chr5:8501344-8546127
Transforming growth factor beta receptor signaling pathway
FUT8 fucosyltransferase 8 (alpha (1,6) fucosyltransferase) 0,028 -2,473 chr5:24711230-24725772
Asparagine biosynthetic process
ASNS asparagine synthetase 1,48E-05 9,945 chr2:24628018-24641745
Melanin biosynthetic process
DDT D-dopachrome tautomerase 3,50E-05 -13,908 chr15:8372896-8375331
  1. Positive values indicated that the genes were up-regulated when fast growing WRR chickens are compared with slow growing XH chickens.
  2. Negative values meant down-regulation when comparison between WRR and XH chickens are made, Data were significantly different (P > 0,05), and fold changes were not smaller than 2.
  3. “---” meant unknown.