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Table 5 Monte-Carlo simulation results of BTA1 with the same LD and genetic linkage observed in the real data

From: Haplotype phasing after joint estimation of recombination and linkage disequilibrium in breeding populations

Average over replicates

 

Total number of SNPs in BTA1

3,343

Total number of SNPs bull heterozygote

751

Percentage of correct phases in informative segments in sire

99.98%

Percentage of correct identification of recombination events

99.87%

Average distance between true and estimated position for recombination events

0.793 Mb (0.002)

Percentage of correct phases in informative segments in calves

99.94%

  1. Informative SNPs are those that can be traced up to sire or dam.