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Table 1 Average estimates of linkage disequilibrium in a double heterozygote sire with varying half-sib family size and varying recombination fraction ( c ) and linkage disequilibrium ( δ )

From: Haplotype phasing after joint estimation of recombination and linkage disequilibrium in breeding populations

  

Family size

Simulated c

Simulated δ

36

100

300

500

1,000

2,000

0.00

-0.10

-0.0905 (0.0401)

-0.0998 (0.0228)

-0.1001 (0.0131)

-0.1001 (0.0101)

-0.1000 (0.0072)

-0.1000 (0.0051)

 

0.00

-0.0044 (0.0412)

-0.0014 (0.0250)

-0.0007 (0.0143)

-0.0003 (0.0110)

-0.0000 (0.078)

-0.0001 (0.0056)

 

0.05

0.0434 (0.0409)

0.0479 (0.0245)

0.0492 (0.0140)

0.0496 (0.0109)

0.0499 (0.0077)

0.0499 (0.0055)

 

0.10

0.0914 (0.0392)

0.0973 (0.0232

0.0990 (0.0133)

0.0995 (0.0101)

0.0998 (0.0072)

0.0998 (0.0051)

 

0.20

0.1873 (0.0304)

0.1957 (0.0163)

0.1985 (0.0089)

0.1992 (0.0068)

0.1996 (0.0048)

0.1998 (0.0034)

0.10

-0.10

-0.0958 (0.0540)

-0.0997 (0.0277)

-0.1003 (0.0153)

-0.1002 (0.0118)

-0.0999 (0.0084)

-0.1000 (0.0059)

 

0.00

0.0076 (0.0069)

0.0042 (0.0422)

0.0002 (0.0192)

0.0001 (0.0134)

0.0001 (0.0099)

0.0000 (0.0000)

 

0.05

0.0544 (0.0664)

0.0581 (0.0493)

0.0531 (0.0281)

0.0513 (0.0189)

0.0505 (0.0118)

0.0502 (0.0081)

 

0.10

0.0925 (0.0576)

0.1081 (0.0493)

0.1074 (0.0346)

0.1059 (0.0281)

0.1032 (0.0197)

0.1013 (0.0125)

 

0.20

0.1534 (0.0364)

0.1721 (0.294)

0.1856 (0.0262)

0.1882 (0.0224)

0.1891 (0.0178)

0.1909 (0.0144)

0.20

-0.10

-0.0889 (0.0705)

-0.0978 (0.0374)

-0.1001 (0.0184)

-0.1001 (0.0141)

-0.0999 0.0099

0.1000 (0.0071)

 

0.00

0.0776 (0.0764)

0.0116 (0.0553)

0.0053 0.0340

0.0026 (0.0239)

0.0010 (0.0147)

0.0003 (0.0096)

 

0.05

0.0485 (0.0723)

0.0572 (0.0535)

0.0580 (0.0384)

0.0569 (0.0322)

0.0549 (0.0246)

0.0525 (0.0167)

 

0.10

0.0818 (0.0651)

0.0961 (0.0508)

0.1008 (0.0362)

0.1017 (0.0307)

0.1033 (0.0258)

0.1039 (0.0215)

 

0.20

0.1237 (0.0461)

0.1474 (0.0425)

0.1526 (0.0316)

0.1536 (0.0274)

0.1538 (0.0222)

0.1539 (0.0184)

  1. The simulated allele frequencies were ƒ T = 0.5 and ƒ M = 0.5. The values between parentheses are standard deviations among replicates.