From: Pig pangenome graph reveals functional features of non-reference sequences
Genome | Breed | Sex | Assembly level | GenBank accession | Region | Reference |
---|---|---|---|---|---|---|
Sus scrofa 11.1 | Duroc | Female | Reference | GCA_000003025.6 | Europe | [31] |
USMARC | US crossbreed pig | Male | Chromosome | GCA_002844635.1 | America | |
DU | Duroc | Male | Chromosome | GCA_015776825.1 | Europe | [51] |
MS | Meishan | Female | Chromosome | GCA_017957985.1 | Asia | [52] |
NX | Ningxiang | Female | Chromosome | GCA_020567905.1 | Asia | [53] |
BMmini | Bamaxiang | Male | Chromosome | GCA_007644095.1 | Asia | [54] |
HP | Hampshire | Female | Scaffold | GCA_001700165.1 | Europe | [7] |
LR | Landrace | Female | Scaffold | GCA_001700215.1 | Europe | |
BK | Berkshire | Female | Scaffold | GCA_001700575.1 | Europe | |
PT | Pietrain | Female | Scaffold | GCA_001700255.1 | Europe | |
LW | Large White | Female | Scaffold | GCA_001700135.1 | Europe | |
BM | Bamei | Female | Scaffold | GCA_001700235.1 | Asia | |
RC | Rongchang | Female | Scaffold | GCA_001700155.1 | Asia | |
TB | Tibetan | Female | Scaffold | GCA_000472085.2 | Asia | |
JH | Jinhua | Female | Scaffold | GCA_001700295.1 | Asia | |
WZS | Wuzhishan | Male | Scaffold | GCA_000325925.2 | Asia | [55] |
EUW | European wild boar | Male | Scaffold | GCA_021656055.1 | Europe | [56] |
KNY | Kenya domestic pig | Male | Scaffold | GCA_019290145.1 | Africa | [57] |
EGM | Ellegaard Gottingen minipig | Female | Scaffold | GCA_000331475.1 | Europe | - |
SWT | Shawutou | Male | Contig | - | Asia | - |
TC | Tunchang | Male | Contig | - | Asia | - |