Fig. 8

Transcriptional profiling analysis of multiple organs and tissues in geese. A Expression level distribution of core, softcore, shell, and cloud genes in the reference genome. B PCA analysis of gene expression levels in all organs and tissues. C Distribution of the tissue-specificity index (TAU) of gene expression in various organs and tissues. D GO enrichment analysis results of tissue-specific genes. E Proportions of tissue-specific genes classified into core, softcore, shell, and cloud genes based on the classification information of genes. F Gene frequency distribution of tissue-specific genes in the population of geese based on PAV information. G Waterfall plot of the variation burden of differentially expressed genes in the ovary during egg-production process in the population of geese. LRP1: Low-density lipoprotein receptor-related protein 1, NFYC: Nuclear transcription factor Y subunit gamma, CD11B: Cyclin-dependent kinase 11B, SCN2B: Sodium channel subunit beta-2, PRP8: Pre-mRNA-processing-splicing factor 8, SSNA1: Sjoegren syndrome nuclear autoantigen 1, HLF: Hepatic leukemia factor, MAML1: Mastermind-like protein 1, HDAC8: Histone deacetylase 8, DLG3: Disks large homolog 3, DIAP2: Protein diaphanous homolog 2, MEF2A: Myocyte-specific enhancer factor 2A homolog, GRIP2: Glutamate receptor-interacting protein 2, GPC1: Glypican-1, EMSY: BRCA2-interacting transcriptional repressor EMSY, KATL2: Katanin p60 ATPase-containing subunit A-like 2, E2F5: Transcription factor E2F5, XPO5: Exportin-5, SAR1A: GTP-binding protein SAR1a, CCAR1: Cell division cycle and apoptosis regulator protein 1, CDKL2: Cyclin-dependent kinase-like 2, RBM33: RNA-binding protein 33, AT1B1: Sodium/potassium-transporting ATPase subunit beta-1, CAPR1: Caprin-1, SVIP: Small VCP/p97-interacting protein, TRAM2: Translocating chain-associated membrane protein 2, RTJK: RNA-directed DNA polymerase from mobile element jockey, MGAP: MAX gene-associated protein, and DPOG2: DNA polymerase subunit gamma-2, mitochondrial