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Fig. 4 | Journal of Animal Science and Biotechnology

Fig. 4

From: Imprinting at the KBTBD6 locus involves species-specific maternal methylation and monoallelic expression in livestock animals

Fig. 4

Allelic expression of the KBTBD6 gene. Heterozygous (i.e., informative) SNPs are shown on genomic DNA (gDNA) except mice which were crossed. SNPs without identifiers (rs IDs) are indicated with genomic coordinates. In the human (Hu), heterozygous SNPs in the normal lung from four individuals [individual IDs from deposited datasets in Additional file 1: Supplementary Table 1 (hereafter, IDs): N3, N16, N26, and N31] and heterozygous SNPs in the normal liver from two individuals (IDs: RK130 and RK141) and one individual (ID: RK141) were analyzed. For rhesus monkeys (RM) two different SNPs in tissues were analyzed (RM1, WGS run ID: SRR1636014 and RNA-seq from the same individual; and RM2, ID: R05040). For chimpanzees (CHM), three different SNPs in tissues were analyzed (IDs: CH114 and CH391). For the mouse (Mo), testes of offspring from reciprocal crosses of CAST/EiJ (C) and C58BL/6 J (B) (RNA-seq run IDs: SRR823506 and SRR823507) and crosses of CZECHII/EiJ (Z) and PWK/PhJ (P) (RNA-seq run IDs: SRR2060844, SRR2060846, and SRR2060939) were analyzed. For dogs, two Belgian Malinois dogs (IDs: Dozer and Crak) were analyzed for two different SNPs. For pigs, three different SNPs from two pigs were analyzed for various tissues (WGS run IDs: SRR7903780 and SRR7903782; and RNA-seq from the same individuals). For cows, the same SNP from three different cows was analyzed (IDs: 6819, 756, and 3847). Lu, lung; Li, liver; Br, brain; Mu, skeletal muscle; He, heart; LCL, lymphoblastoid cell line; Te, testis; Ad, adipose tissue; Sp, spleen; SI, small intestine; Ki, kidney

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