Table 2 The variants of single sheep sample
Chr. | Pos. | Ref | Alt | Quality | Genotype (Coverage) | Genes | Traits | References |
|---|---|---|---|---|---|---|---|---|
Chr 3 | 203,630,734 | T | A | 1,292.64 | 0/1 (87) | ETV6 | Â | Â |
Chr 4 | 107,926,030 | G | A | 1,085.64 | 0/1 (110) | CLCN1 | Congenital myotonia | [36] |
Chr 7 | 53,213,797 | C | T | 1,097.64 | 0/1 (89) | RAB27A | Coat color | [37] |
Chr 7 | 97,727,843 | T | C | 1,460.64 | 0/1 (144) | Â | Â | Â |
Chr 8 | 25,802,309 | C | T | 1,545.06 | 1/1 (48) | Â | Â | Â |
Chr 8 | 70,844,812 | C | T | 1,417.64 | 0/1 (97) | GRM1 | Seasonal reproduction and litter size | [38] |
Chr 10 | 66,396,204 | G | A | 2,214.64 | 0/1 (140) | GPC5 | Number of nipples | [39] |
Chr 15 | 43,140,362 | G | A | 1,086.06 | 1/1 (40) | DENND5A | Â | Â |
Chr 17 | 5,200,643 | C | T | 1,041.64 | 0/1 (69) | TMEM154 | Lentivirus susceptibility | [40] |
Chr 21 | 14,920,907 | C | T | 1,047.86 | 0/1 (298) | TENM4 | Â | Â |
Chr 22 | 9,142,767 | A | C | 1,549.64 | 0/1 (98) | PAPSS2 | Scrapie pathology | [41] |
Chr 24 | 21,211,416 | T | C | 1,369.64 | 0/1 (75) | Â | Â | Â |
Chr 24 | 29,870,252 | A | G | 1,064.64 | 0/1 (69) | GALNT17 | Milk oligosaccharides synthesis | [42] |
Chr X | 92,508,011 | T | A | 2,366.06 | 1/1 (77) | Â | Â | Â |