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Table 4 Breed (Jersey relative to Holstein–Friesian) effect solutions and 95% credibility intervals from scenarios one to eight, for the three different methods used to analyze age at first blood plasma progesterone elevation (AGEP4) phenotypes

From: Comparison of methods for deriving phenotypes from incomplete observation data with an application to age at puberty in dairy cattle

Scenario

Breed (Jersey) effect solution

CAT

AGEVISIT

AUG

1

Early, mid and late visit (EML)

−1.62 (−1.26,−1.99)

−29 (−15,−43)

−56 (−34,−79)

2

Early, mid or late visit (E/M/L)

−1.31 (−0.87,−1.75)

0 (7,−7)

−40 (−18,−62)

3

Early visit only (E)

−1.58 (−1.09,−2.06)

−2 (5,−10)

−47 (−24,−72)

4

Mid visit only (M)

−1.47 (−1.01,−1.92)

−4 (3,−11)

−45 (−23,−67)

5

Late visit only (L)

−0.84 (−0.44,−1.26)

1 (8,−7)

−25 (−5,−44)

6

Early and mid visit (EM)

−1.67 (−1.26,−2.06)

−17 (−7,−27)

−54 (−34,−74)

7

Mid and late visit (ML)

−1.46 (−1.07,−1.85)

−16 (−6,−26)

−45 (−26,−64)

8

Early and late visit (EL)

−1.45 (−1.07,−1.83)

−24 (−11,−37)

−54 (−28,−78)

  1. CAT: the number of the visit where the animal was first observed to have elevated BP4; AGEVISIT: age in day at the visit the animal was first observed to have elevated BP4; and AUG: the continuous variable AGEP4 sampled from between the known lower and upper bounds. Scenarios are described in Fig. 1, and analysis methods are described in Table 2