From: Application of imputation methods to genomic selection in Chinese Holstein cattle
Strategy1 | No. of animals | No. of SNPs |
---|---|---|
Imputation before quality control | Â | Â |
   S1: Impute A - QC3% | 2, 092 | 45, 072 |
   S2: Impute B - QC3% | 2, 092 | 45, 614 |
   S3: Impute A - QC5% | 2, 092 | 43, 710 |
   S4: Impute A - QC0 | 2, 092 | 53, 973 |
Imputation after quality control | Â | Â |
   S5: Impute A - QC3% | 2, 021 | 43, 481 |
   S6: Impute A - QC5% | 2, 021 | 41, 866 |